Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs74453883 chr2:70527268 G/A 0 175 15.4 17.4 1.03 KM Plot
PAAD rs74456927 chr7:154692215 T/A 6.11E-15 177 15.82 12.93 2.82 KM Plot
PAAD rs74473580 chr2:70412334 A/C 0 176 15.4 18.43 1.03 KM Plot
PAAD rs74475302 chr1:227319072 A/G 3.2E-5 178 15.53 15.65 3.9 KM Plot
PAAD rs74491441 chr1:227226201 G/C 4.08E-5 176 15.55 15.43 3.9 KM Plot
PAAD rs74499123 chr6:44879013 CCACA/C 0.000105 177 16.22 16.13 11.98 KM Plot
PAAD rs74505194 chr3:170105709 G/A 8.53E-5 176 7.9 15.27 15.67 KM Plot
PAAD rs74514131 chr1:227514576 T/A 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs7451423 chr6:45241343 C/T 0.000122 173 16.48 15.77 12.2 KM Plot
PAAD rs74576257 chr2:70466492 T/C 0 178 15.33 18.43 1.03 KM Plot
PAAD rs7459 chr2:70523141 G/A 0 178 15.37 17.4 1.03 KM Plot
PAAD rs74593284 chr2:128504311 T/C 1.08E-9 177 15.62 12.87 2.2 KM Plot
PAAD rs74599093 chr1:227447282 G/A 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs74616882 chr2:70540140 T/C 0 175 15.4 17.4 1.03 KM Plot
PAAD rs74619440 chr2:70445251 G/C 0 178 15.37 17.4 1.03 KM Plot